cobind
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Documentation
1. Introduction
2. Definitions
3. Installation
4. Input file and data format
5. Test dataset
6. Release history
Usage Information
1. Overview
2. Collocation coefficient (C)
3. Jaccard coefficient (J)
4. Dice coefficient (SD)
5. Szymkiewicz–Simpson coefficient (SS)
6. Pointwise mutual information (PMI)
7. Normalized pointwise mutual information (NPMI)
8. Cooccurrence
9. Covary
10. Spatial Relation Of Genomic (SROG) intervals
11. Stat
12. Z-score
Evaluation
Compare different metrics
CTCF: Demonstration
Performance
Performance (CPU & memory usage)
License
LICENSE
Acknowledgements
Acknowledgements
Contact
Contact
Reference
Reference
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