5. Test dataset

5.1. CTCF ChIP-seq

Project	ENCODE
Lab	Michael Snyder, Stanford
TF	CTCF (CCCTC-binding factor)
Bio sample	Homo sapiens K562
Reference genome	GRCh38
narrowPeak (bed)	ENCFF660GHM.bed.gz (md5sum = 2b9e2c2ba7afe8d64f5f3549ce16cf1a)
narrowPeak (bigBed)	ENCFF400DFR.bigBed (md5sum = 15bf51e2a37b8d93b44c8746b83583b4)
signal Pvalue (bigWig)	ENCFF336UPT.bigWig (md5sum = 883eb33a975e14130e142b98070b14c0)

5.2. RAD21 ChIP-seq

Project	ENCODE
Lab	Michael Snyder, Stanford
TF	RAD21
Bio sample	Homo sapiens K562
Reference genome	GRCh38
narrowPeak (bed)	ENCFF057JFH.bed.gz (md5sum = 0e638759eb09e8d0825d3d124b2c77d6)
narrowPeak (bigBed)	ENCFF066JWO.bigBed (md5sum = 92d3e303d3d880db5c9d604823e9831d)
signal Pvalue (bigWig)	ENCFF130GMP.bigWig (md5sum = c7e73bd2fba6a21a9d02da181e303578)

5.3. Other files

These files can be used as genomic “background”.

Dataset (Human, GRCh38/hg38)	md5sum
remap2022_CRM_hg38_v1_0.bed.gz	4717178cd730471f5ac897838c55847c
ENCODE_CCRE_hg38.bed.gz	a572f25b1f7a51283591f4afd8f0c3b7
GeneHancer_v4.4_hg38.bed.gz	e6fbecf8f637db49ce12d1390c6285b6
CpG_island_hg38.bed.gz	8c783529fb4a8f86b1d90d70afa6a1f7

Dataset (Mouse, GRCm39/mm39)	md5sum
remap2022_CRM_mm39_v1_0.bed.gz	9c20058b6ab324f2292029566e59993a

Dataset (Fly, dm6)	md5sum
remap2022_CRM_dm6_v1_0.bed.gz	3633180a8cba0495147682cc9b288aca