cobind

latest

Documentation

1. Introduction
2. Definitions
3. Installation
4. Input file and data format
5. Test dataset
6. Release history

Usage Information

1. Overview
2. Collocation coefficient (C)
3. Jaccard coefficient (J)
4. Dice coefficient (SD)
5. Szymkiewicz–Simpson coefficient (SS)
6. Pointwise mutual information (PMI)
7. Normalized pointwise mutual information (NPMI)
8. Cooccurrence
9. Covary
10. Spatial Relation Of Genomic (SROG) intervals
11. Stat
12. Z-score

Evaluation

Compare different metrics
CTCF: Demonstration

Performance

Performance (CPU & memory usage)

License

LICENSE

Acknowledgements

Acknowledgements

Contact

Contact

Reference

Reference

cobind

Contact
Edit on GitHub

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Bugs report to github

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© Copyright 2023, Liguo Wang. Revision 5c48d012. Last updated on Aug 11, 2023.

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