cobind’s documentation
Documentation
- 1. Introduction
- 2. Definitions
- 2.1. Symbols definitions
- 2.2. Spacial Relations of Genomic regions (SROG)
- 2.3. Collocation coefficient (C)
- 2.4. Jaccard coefficient (J)
- 2.5. Sørensen–Dice coefficient (SD)
- 2.6. Szymkiewicz–Simpson coefficient (SS)
- 2.7. Pointwise mutual information (PMI)
- 2.8. Normalized pointwise mutual information (NPMI)
- 2.9. Which metric to use?
- 3. Installation
- 4. Input file and data format
- 5. Test dataset
- 6. Release history
Usage Information
- 1. Overview
- 2. Collocation coefficient (C)
- 3. Jaccard coefficient (J)
- 4. Dice coefficient (SD)
- 5. Szymkiewicz–Simpson coefficient (SS)
- 6. Pointwise mutual information (PMI)
- 7. Normalized pointwise mutual information (NPMI)
- 8. Cooccurrence
- 9. Covary
- 10. Spatial Relation Of Genomic (SROG) intervals
- 11. Stat
- 12. Z-score
Evaluation
Performance
License
Acknowledgements
Contact
Reference