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stable

Documentation

  • 1. Introduction
  • 2. Definitions
  • 3. Installation
  • 4. Input file and data format
  • 5. Test dataset
  • 6. Release history

Usage Information

  • 1. Overview
  • 2. Collocation coefficient (C)
  • 3. Jaccard coefficient (J)
  • 4. Dice coefficient (SD)
  • 5. Szymkiewicz–Simpson coefficient (SS)
  • 6. Pointwise mutual information (PMI)
  • 7. Normalized pointwise mutual information (NPMI)
  • 8. Cooccurrence
  • 9. Covary
  • 10. Spatial Relation Of Genomic (SROG) intervals
  • 11. Stat
  • 12. Z-score

Evaluation

  • Compare different metrics
  • CTCF: Demonstration

Performance

  • Performance (CPU & memory usage)

License

  • LICENSE

Acknowledgements

  • Acknowledgements

Contact

  • Contact

Reference

  • Reference
cobind
  • Search

© Copyright 2022, Liguo Wang. Revision 8e7c1a2b. Last updated on Jul 06, 2023.

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